Basic Information
VIS ID
TVIS10015614
Fusion event
HBV-LOC105371030 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
102327821/101787618 (Hg38)
End
102327821/101787618 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371030
Nearest miRNA
hsa-mir-10393/Upstream/3003116; hsa-mir-1302-10/Downstream/172841;
Nearest TSS
ENST00000557528/Upstream/63014; ENST00000328882/Downstream/15891;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/22798, chr15-CpG: 116/Downstream/173533
Nearby gene
OR4F6 ;
Upstream sequence
TTTTGACTTGAATGGAAATGTTATGTCTGAGGGGTCCCAGTTTTGCTAATGACACACTTAATTGACAATATA
Junction sequence
TTTTGACTTGAATGGAAATGTTATGTCTGAGGGGTCCCAGTTTTGCTAATGACACACTTAATTGACAATATACAGACCAATTTATGCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate