Basic Information
VIS ID
TVIS10015616
Fusion event
HBV-chr13 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
82830019/82255884 (Hg38)
End
82830019/82255884 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-1297/Upstream/4557768; hsa-mir-1267/Downstream/5362781;
Nearest TSS
ENST00000623511/Upstream/1005446; ENST00000446314/Downstream/1626509;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1600574, chr13-CpG: 18/Downstream/1623645
Upstream sequence
AAAGTTTTAAAAATATACGGGATTATAAAGGGA
Junction sequence
AAAGTTTTAAAAATATACGGGATTATAAAGGGACAATGTCCATGCCCCAAAGCCACCCAAGGCACAGCTTGGAGGCTTGGAACGTAGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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