Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015622
Fusion event
HBV-SOS1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr2
Cytoband
p22.1
Reference genome
Start
End
39345630/39118489 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-23b-3p ; hsa-mir-4325 ; hsa-mir-4789-5p ; hsa-mir-5011-5p ; hsa-mir-124-3p ; hsa-mir-3157-5p ; hsa-mir-6715a-3p ; hsa-mir-4691-3p ; hsa-mir-5571-5p ; hsa-mir-5089-3p ; hsa-mir-466 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-548an ; hsa-mir-1178-3p ; hsa-mir-196b-3p ; hsa-mir-3613-3p ; hsa-mir-433-5p ; hsa-mir-216a-3p ; hsa-mir-3681-3p ; hsa-mir-128-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-146a-5p
Nearest miRNA
hsa-mir-1301/Upstream/3647003; hsa-mir-10b/Downstream/8259186;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/157662, chr2-CpG: 126/Downstream/1621
Upstream sequence
TAAATAAGAATTGGAAGAACCTTACATATCAGCT
Junction sequence
TAAATAAGAATTGGAAGAACCTTACATATCAGCTCAAAAATCATTAACCTAATCTCCTCCCCCAACTCCTCCCAGTCCTTAAACACAC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.