Basic Information
VIS ID
TVIS10015624
Fusion event
HBV-chr12 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
95486/10252 (Hg38)
End
95486/10252 (Hg38)
Orient
-
Nearest miRNA
hsa-let-7i/Downstream/1650063;
Nearest TSS
ENST00000382841/Downstream/27850;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/20537
Nearby gene
WASH8P(+) ;
Upstream sequence
GGGTTAGGGGTAGGGTTAGGGTTAGGGTTAGGG
Junction sequence
GGGTTAGGGGTAGGGTTAGGGTTAGGGTTAGGGTTATACCTACAGCCTCCTAGTACAAAGATCATTAAGCTAATCTCCTCCCCCAATT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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