Basic Information
VIS ID
TVIS10015626
Fusion event
HBV-chr19 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
35045301/34554396 (Hg38)
End
35045301/34554396 (Hg38)
Orient
-
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/14155042; hsa-let-7e/Downstream/568304;
Nearest TSS
ENST00000633603/Upstream/71868; ENST00000512455/Downstream/23064;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/56350, chr19-CpG: 43/Downstream/23105
Nearby gene
SCGB1B2P(+) ;
Upstream sequence
GACCAGGAATGGCAGTGGGACAGTTAAATCAACC
Junction sequence
GACCAGGAATGGCAGTGGGACAGTTAAATCAACCTTGCATGGTGCTGGTGAACACACCAATTTATGCCTACAGCCTCCTAGTACAAAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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