Basic Information
VIS ID
TVIS10015651
Fusion event
HBV-chr14 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
80385490/79919147 (Hg38)
End
80385490/79919147 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1260a/Upstream/2652857; hsa-mir-1185-1/Downstream/14029079;
Nearest TSS
ENST00000550708/Upstream/127884; ENST00000553979/Downstream/55022;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/57159, chr14-CpG: 29/Downstream/1022219
Nearby gene
NRXN3(+) ;
Upstream sequence
AGAGAAATAATTTCCTAATCTTAGCTCTTTGACAAAGAAAATAAATAGCCAACATGTCTCTATGTAAG
Junction sequence
AGAGAAATAATTTCCTAATCTTAGCTCTTTGACAAAGAAAATAAATAGCCAACATGTCTCTATGTAAGGGTGATGGTGAACACACCAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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