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TVIS10015653
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015653
Fusion event
HBV-PHACTR4 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
28819591/28493079 (Hg38)
End
28819591/28493079 (Hg38)
Orient
-
Location type
Intronic
Target gene
PHACTR4
miRNAs that regulate target gene
hsa-mir-361-5p
;
hsa-mir-98-5p
;
hsa-mir-877-3p
;
hsa-mir-484
;
hsa-mir-92a-3p
;
hsa-mir-181a-5p
;
hsa-mir-222-3p
;
hsa-mir-519e-5p
;
hsa-mir-515-5p
;
hsa-mir-769-5p
;
hsa-mir-4786-5p
;
hsa-mir-5695
;
hsa-mir-454-5p
;
hsa-mir-665
;
hsa-mir-887-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-7160-5p
;
hsa-mir-202-3p
;
hsa-mir-4500
;
hsa-mir-4458
;
hsa-let-7i-5p
;
hsa-let-7g-5p
;
hsa-let-7f-5p
;
hsa-let-7e-5p
;
hsa-let-7d-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-6884-5p
;
hsa-mir-485-5p
;
hsa-mir-7162-3p
;
hsa-mir-1281
;
hsa-mir-4478
;
hsa-mir-4419b
;
hsa-mir-3929
;
hsa-mir-6888-5p
;
hsa-mir-1294
;
hsa-mir-22-3p
;
hsa-mir-2278
;
hsa-mir-3065-3p
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-3184-5p
;
hsa-mir-3190-3p
;
hsa-mir-3196
;
hsa-mir-3617-3p
;
hsa-mir-3656
;
hsa-mir-383-3p
;
hsa-mir-3976
;
hsa-mir-423-5p
;
hsa-mir-4459
;
hsa-mir-4710
;
hsa-mir-4722-5p
;
hsa-mir-6079
;
hsa-mir-6134
;
hsa-mir-6165
;
hsa-mir-671-5p
;
hsa-mir-6816-5p
;
hsa-mir-6828-5p
;
hsa-mir-6894-5p
;
hsa-mir-7854-3p
Nearest miRNA
hsa-mir-12136/Upstream/1938486; hsa-mir-101-1/Downstream/2246077;
Nearest TSS
ENST00000473358/Upstream/1384;
ENST00000486790/Downstream/12864;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/122859
,
chr1-CpG: 78/Downstream/25062
Nearest cancer related gene
PHACTR4
(TSG, No orient, 0)
Upstream sequence
AAAAGCTCCGAGATGGAGGTTCATGAAGAGAGCAATC
Junction sequence
AAAAGCTCCGAGATGGAGGTTCATGAAGAGAGCAATCGAACACACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTTAACCTC
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Sample Information
×
Sample name
N23
Sample type
Adjacent tissue
Gender
Female
CpG Island Information
×
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