hsa-mir-1294 _LIHC.png
PHACTR4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015653
Fusion event
HBV-PHACTR4 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
End
28819591/28493079 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/1938486; hsa-mir-101-1/Downstream/2246077;
Nearest cancer related gene
PHACTR4(TSG, No orient, 0)
Upstream sequence
AAAAGCTCCGAGATGGAGGTTCATGAAGAGAGCAATC
Junction sequence
AAAAGCTCCGAGATGGAGGTTCATGAAGAGAGCAATCGAACACACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTTAACCTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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