Basic Information
VIS ID
TVIS10015656
Fusion event
HBV-chr3 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr3
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
43181122/43139630 (Hg38)
End
43181122/43139630 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-12127/Upstream/4001364; hsa-let-7g/Downstream/974582;
Nearest TSS
ENST00000440867/Upstream/33554; ENST00000462810/Downstream/146882;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/33409, chr3-CpG: 63/Downstream/146576
Nearby gene
POMGNT2 ;
Upstream sequence
CATGAAGAAGAAGCTGTCAGACGTGATTTCCT
Junction sequence
CATGAAGAAGAAGCTGTCAGACGTGATTTCCTGTGAACAGACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTTAACCTAATC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate