Basic Information
VIS ID
TVIS10015658
Fusion event
HBV-chr1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
37026302/36560701 (Hg38)
End
37026302/36560701 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12136/Upstream/1891007; hsa-mir-101-1/Downstream/600862;
Nearest TSS
ENST00000473358/Upstream/77423; ENST00000641463/Downstream/143252;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/96171, chr1-CpG: 233/Downstream/472075
Nearby gene
CSF3R ;
Nearest cancer related gene
CSF3R(OG, -) ;
Upstream sequence
TCATCCCACTGCCCCAAGCTGGCACTTGGGCTAGCTACCTGCC
Junction sequence
TCATCCCACTGCCCCAAGCTGGCACTTGGGCTAGCTACCTGCCAAGTTGCATGGTGCTGGTGAACAGACCAATTTATGCCTACAGCCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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