Basic Information
VIS ID
TVIS10015659
Fusion event
HBV-LOC400464 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
100354564/99814359 (Hg38)
End
100354564/99814359 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC400464
Nearest miRNA
hsa-mir-10393/Upstream/1029857; hsa-mir-1302-10/Downstream/2146100;
Nearest TSS
ENST00000557528/Upstream/6371; ENST00000622345/Downstream/24271;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/7110, chr15-CpG: 297/Downstream/111916
Nearby gene
DNM1P46 ;
Upstream sequence
GAAGCCATTATTATTATATATTAGCTTCAGAACAACTAGATT
Junction sequence
GAAGCCATTATTATTATATATTAGCTTCAGAACAACTAGATTGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAAACTTT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate