USP33 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015664
Fusion event
HBV-USP33 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
78219985/77754300 (Hg38)
End
78219985/77754300 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
USP33
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-1-3p ; hsa-mir-877-5p
Nearest miRNA
hsa-mir-101-1/Upstream/694098; hsa-mir-11399/Downstream/7379494;
Nearest TSS
ENST00000473358/Upstream/8838; ENST00000476203/Downstream/5088;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/70567, chr1-CpG: 78/Downstream/4858
Nearest cancer related gene
USP33(TSG, No orient, 0)
Upstream sequence
ATAAGCTTATTCCTTCATTGTATTTTTGCTAAAGTGTA
Junction sequence
ATAAGCTTATTCCTTCATTGTATTTTTGCTAAAGTGTATACGCCTCAAGGGCGGTAGTTGACATTGCCGAGAGGACAAGCGCCCGCTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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