CNTN6 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015669
Fusion event
HBV-CNTN6 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
1171741/1130057 (Hg38)
End
1171741/1130057 (Hg38)
Orient
-
Location type
Intronic
Target gene
CNTN6
Nearest miRNA
hsa-let-7g/Downstream/4120120;
Nearest TSS
ENST00000440867/Upstream/37033; ENST00000485257/Downstream/271228;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/820847, chr3-CpG: 182/Downstream/968288
Upstream sequence
TTTTAGTGTGATTTATCTATTAAAAGTCCTGTC
Junction sequence
TTTTAGTGTGATTTATCTATTAAAAGTCCTGTCAGACAACTACTGTGGCTGGGGGACAGACCCATTTATGTCTTCAGTCTACGAATAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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