Basic Information
VIS ID
TVIS10015671
Fusion event
HBV-LOC101927066 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
98334180/97321952 (Hg38)
End
98334180/97321952 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8B
Target gene
LOC101927066
Nearest miRNA
hsa-mir-12123/Upstream/2248956; hsa-mir-10400/Downstream/1071693;
Nearest TSS
ENST00000518652/Upstream/43988; ENST00000522313/Downstream/322227;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/43776, chr8-CpG: 15/Downstream/302514
Nearby gene
TSPYL5 ;
Upstream sequence
GCCTATTGAGGTGGAGCTGATGCTGGGGCAGAGGGATGAGCTCTGGCCGCCAGTT
Junction sequence
GCCTATTGAGGTGGAGCTGATGCTGGGGCAGAGGGATGAGCTCTGGCCGCCAGTTCAGACCAATTTATGCCTACAGCCTCATAGTACA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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