Basic Information
VIS ID
TVIS10015673
Fusion event
HBV-chr12 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
68942537/68548757 (Hg38)
End
68942537/68548757 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7i/Upstream/2297600; hsa-mir-1178/Downstream/724400;
Nearest TSS
ENST00000382841/Upstream/97094; ENST00000489473/Downstream/62082;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/216062, chr12-CpG: 132/Downstream/61683
Nearby gene
RAP1B ;
Upstream sequence
TAATAATAATAATAATAGTAATAAATAGAATGCTTAGGAGTGGGAACTTTGG
Junction sequence
TAATAATAATAATAATAGTAATAAATAGAATGCTTAGGAGTGGGAACTTTGGAGTATGCCTCCAGGGCGGTCGGTGACATTGCTGAGA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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