Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015674
Fusion event
HBV-ACSM2A integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr16
Cytoband
p12.3
Reference genome
Start
End
20494922/20483600 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-3184-3p ; hsa-mir-6818-3p ; hsa-mir-6888-3p ; hsa-mir-6873-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-3120-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-6812-3p ; hsa-mir-216b-5p ; hsa-mir-6807-5p ; hsa-mir-8055 ; hsa-mir-6844 ; hsa-mir-3191-5p ; hsa-mir-6758-3p ; hsa-mir-5571-5p ; hsa-mir-4742-3p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-218-2-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-4320 ; hsa-mir-4797-5p ; hsa-mir-526b-5p ; hsa-mir-6847-5p
Nearest miRNA
hsa-mir-1225/Upstream/1989024; hsa-mir-11401/Downstream/1022449;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/134424, chr16-CpG: 65/Downstream/257724
Upstream sequence
GAGGTCATTTTTCAGGCATCAAGCTAGATTGTCTTTCTGGGCTTTCTTGATCATAGAAAGACTTT
Junction sequence
GAGGTCATTTTTCAGGCATCAAGCTAGATTGTCTTTCTGGGCTTTCTTGATCATAGAAAGACTTTGTCTCAAATGCCTCAATGTCGGT
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.