Fusion event
HBV-GALNTL5 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
End
151705761/152008676 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10399/Upstream/575037; hsa-mir-153-2/Downstream/5565660;
Upstream sequence
CTTTCATAATGCTTCAGATACTTGATTATGCATATAAAAATATCTAGAACAATA
Junction sequence
CTTTCATAATGCTTCAGATACTTGATTATGCATATAAAAATATCTAGAACAATATGAAAAAGTTGCATGGTGCTGGGGAGCACAGCAA
* Color:
Human Sequence
/
Virus Sequence
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Overlapped sequence
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Unknown sequence
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.