Basic Information
VIS ID
TVIS10015695
Fusion event
HBV-chrY integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
10026562/10188953 (Hg38)
End
10026562/10188953 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-3690-2/Upstream/5582725; hsa-mir-12120/Downstream/3290224;
Nearest TSS
ENST00000430575/Upstream/278155; ENST00000417071/Downstream/2473381;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/95583, chrY-CpG: 148/Downstream/6371
Nearby gene
CDC27P2(+1417) ;
Upstream sequence
AAAAGCTGGCCGATCTGAATAATCCTCCTTTAAACAAACACAATTTTTGATAGGGTT
Junction sequence
AAAAGCTGGCCGATCTGAATAATCCTCCTTTAAACAAACACAATTTTTGATAGGGTTAAGTTGCATGGTGCTGGTGAGCACACCAATT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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