ERN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015698
Fusion event
HBV-ERN2 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr16
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
23703217/23691896 (Hg38)
End
23703217/23691896 (Hg38)
Orient
+
Location type
Intronic
Target gene
ERN2
Nearest miRNA
hsa-mir-1225/Upstream/2185761; hsa-mir-11401/Downstream/511220;
Nearest TSS
ENST00000527434/Upstream/3220; ENST00000563611/Downstream/2864;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/12546, chr16-CpG: 46/Downstream/21053
Upstream sequence
AAAAGTCCTAAGTTTGGGTCCTGGGCAATAAGAAATGGACAGAAATGGTTAGG
Junction sequence
AAAAGTCCTAAGTTTGGGTCCTGGGCAATAAGAAATGGACAGAAATGGTTAGGCCTTGGGCAGGTTCCTGTGGGCGTTCACGGTGGTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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