CCNC _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015701
Fusion event
HBV-CCNC integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr6
Cytoband
q16.2
Reference genome
GRCh37/hg19
Start
100012635/99564759 (Hg38)
End
100012635/99564759 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCNC
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-let-7c-5p
Nearest miRNA
hsa-mir-10398/Upstream/440063; hsa-mir-1202/Downstream/7219366;
Nearest TSS
ENST00000381078/Upstream/2887; ENST00000607332/Downstream/3338;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/49157, chr6-CpG: 61/Downstream/3434
Nearest cancer related gene
CCNC(TSG, No orient, 0)
Upstream sequence
CCCAAGTTTAAATATCTCTCAGTATTTATTTGTAATAC
Junction sequence
CCCAAGTTTAAATATCTCTCAGTATTTATTTGTAATACATTCCTCCCACTCAGTAAACACACAGTCTTTGAAGTATGCCTCAAGGTCG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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