hsa-mir-4753-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015703
Fusion event
HBV-RBFOX1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
7464068/7414067 (Hg38)
End
7464068/7414067 (Hg38)
Orient
+
Location type
Intronic
Target gene
RBFOX1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-let-7b-5p ; hsa-mir-3157-5p ; hsa-mir-153-5p ; hsa-mir-935 ; hsa-mir-4691-3p ; hsa-mir-1305 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-498 ; hsa-mir-4753-3p ; hsa-mir-627-3p ; hsa-mir-6832-3p ; hsa-mir-562
Nearest miRNA
hsa-mir-1225/Upstream/1781501; hsa-mir-11401/Downstream/3892373;
Nearest TSS
ENST00000527434/Upstream/81317; ENST00000569889/Downstream/8711;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/109460, chr16-CpG: 22/Downstream/104126
Upstream sequence
TGTAACATGTACAGATTCTTATCTCACT
Junction sequence
TGTAACATGTACAGATTCTTATCTCACTCACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCTTTAACCTAACCTCTTCCCCCAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate