Basic Information
VIS ID
TVIS10015705
Fusion event
HBV-chr11 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
37469331/37447781 (Hg38)
End
37469331/37447781 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-1343/Upstream/1437577; hsa-let-7a-2/Downstream/6111875;
Nearest TSS
ENST00000527297/Upstream/849502; ENST00000532562/Downstream/490820;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/937314, chr11-CpG: 49/Downstream/5864108
Upstream sequence
CATGGAGAATAGATGTACCTTTCAACAGACATAGATGTAAAAATGTAACAACAGCT
Junction sequence
CATGGAGAATAGATGTACCTTTCAACAGACATAGATGTAAAAATGTAACAACAGCTAAAGTTGCATGGTGCTGGTGAACACACCAATT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate