Basic Information
VIS ID
TVIS10015708
Fusion event
HBV-chr17 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
15087962/15184645 (Hg38)
End
15087962/15184645 (Hg38)
Orient
-
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/1640999; hsa-mir-10226/Downstream/66982;
Nearest TSS
ENST00000595228/Upstream/78458; ENST00000579159/Downstream/76123;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/839241, chr17-CpG: 77/Downstream/75968
Nearby gene
PMP22(+) ;
Upstream sequence
ATATATAACTATTATGTACCTATAACAATTA
Junction sequence
ATATATAACTATTATGTACCTATAACAATTAGGTGCTGGTGAACAGACCAATTTATGCCTACAGCCTCCTAGTACAAAGATCATTAAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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