Basic Information
VIS ID
TVIS10015710
Fusion event
HBV-LOC105376010 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr9
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
31699788/31699790 (Hg38)
End
31699788/31699790 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9C
Target gene
LOC105376010
Nearest miRNA
hsa-mir-101-2/Upstream/2810835; hsa-let-7a-1/Downstream/1408902;
Nearest TSS
ENST00000422679/Upstream/318300; ENST00000541043/Downstream/684813;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/445025, chr9-CpG: 59/Downstream/684632
Upstream sequence
TCAGCACTTCATACGATGGATGATCCATGC
Downstream sequence
ACGAAGATCGTAAGAG
Junction sequence
TCAGCACTTCATACGATGGATGATCCATGCTCACGGTGGTCTCCATGCGACGTGCAGAGGTGAAGCGAAGTGACGAAGATCGTAAGAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate