DLG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015722
Fusion event
HBV-DLG2 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr11
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83192185/83481142 (Hg38)
End
83192185/83481142 (Hg38)
Orient
+
Location type
Intronic
Target gene
DLG2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-148b-3p
Nearest miRNA
hsa-mir-10392/Upstream/1590306; hsa-let-7a-2/Downstream/2797191;
Nearest TSS
ENST00000527297/Upstream/18993; ENST00000531424/Downstream/3071;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/194649, chr11-CpG: 24/Downstream/2147157
Upstream sequence
AAGCAAGTCATTCAGCATGAATTTAAAAAAAACATACTTCAGCCAGAACCTGT
Junction sequence
AAGCAAGTCATTCAGCATGAATTTAAAAAAAACATACTTCAGCCAGAACCTGTAAAGATCATTAACCTAATCTCCTCCCACAACTCCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate