Basic Information
VIS ID
TVIS10015723
Fusion event
HBV-LOC100507506 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
GRCh37/hg19
Start
4136331/4136097 (Hg38)
End
4136331/4136097 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100507506
Nearest miRNA
hsa-mir-4645/Upstream/1281990; hsa-mir-10398/Downstream/1012136;
Nearest TSS
ENST00000381078/Upstream/25; ENST00000563079/Downstream/52012;
Nearest CpG islands
chr6-CpG: 28/Target, None/Upstream, None/Downstream
Nearby gene
ECI2 ;
Upstream sequence
AGGTCCGCCCGAGAGAGCAGCCGCGCCTCCAGCTCGCAGTTA
Junction sequence
AGGTCCGCCCGAGAGAGCAGCCGCGCCTCCAGCTCGCAGTTAAAAGTTGCATGGTGCTGGTGAACAGACCAATTTATGCCTACAGCCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate