Basic Information
VIS ID
TVIS10015727
Fusion event
HBV-LOC105374258 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
186380136/186662347 (Hg38)
End
186380136/186662347 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
LOC105374258
Nearest miRNA
hsa-let-7g/Upstream/894443; hsa-mir-1248/Downstream/124325;
Nearest TSS
ENST00000440867/Upstream/2131; ENST00000495413/Downstream/3356;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/91498, chr3-CpG: 20/Downstream/110466
Nearby gene
HRG ;
Upstream sequence
CCGAGAAATTGTGTCTGACAGAAGGGAAGAAATGACTGT
Junction sequence
CCGAGAAATTGTGTCTGACAGAAGGGAAGAAATGACTGTGTTGCATGGTGCTGGTGAACAGACCAATTTATGCCTACAGCCTCCTAGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate