Basic Information
VIS ID
TVIS10015732
Fusion event
HBV-chr4 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr4
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
14022387/14020763 (Hg38)
End
14022387/14020763 (Hg38)
Orient
+
Fragile sites / regions
FRA4D
Nearest miRNA
hsa-mir-12113/Upstream/392806; hsa-mir-12115/Downstream/6507512;
Nearest TSS
ENST00000502981/Upstream/200653; ENST00000514339/Downstream/114173;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/392732, chr4-CpG: 31/Downstream/842121
Nearby gene
LINC01085 ;
Upstream sequence
CCCTTCACCCATGTGCTTTGGGTAGCTACTCTTCCTGCAACCCTAAAAAGG
Junction sequence
CCCTTCACCCATGTGCTTTGGGTAGCTACTCTTCCTGCAACCCTAAAAAGGCTACAGCCTCCTAGTACAAAGATCATTAACCTAATCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate