NELL1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015735
Fusion event
HBV-NELL1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr11
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
20703915/20682369 (Hg38)
End
20703915/20682369 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11C ; FRA11I
Target gene
NELL1
Nearest miRNA
hsa-mir-210/Upstream/922286; hsa-let-7a-2/Downstream/2736736;
Nearest TSS
ENST00000527297/Upstream/11072; ENST00000528046/Downstream/86856;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/12070, chr11-CpG: 88/Downstream/1510257
Upstream sequence
TGTTTTTTAAAAAAAGTAAAATATCTTATTAATATA
Junction sequence
TGTTTTTTAAAAAAAGTAAAATATCTTATTAATATAAAAGACCTTTAACCTAATCTCCTCCCCCAACTCCTCCCAGTCTTTAAACAAA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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