hsa-mir-3202 _LIHC.png
PPM1H _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015737
Fusion event
HBV-PPM1H integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr12
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
63181366/62787586 (Hg38)
End
63181366/62787586 (Hg38)
Orient
+
Location type
Intronic
Target gene
PPM1H
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-125b-5p ; hsa-mir-222-3p ; hsa-mir-30c-5p ; hsa-mir-93-5p ; hsa-mir-7150 ; hsa-mir-3915 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-4710 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-3665 ; hsa-mir-3202 ; hsa-mir-4695-3p ; hsa-mir-3928-3p ; hsa-mir-3179 ; hsa-mir-125a-3p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-6875-3p ; hsa-mir-670-5p ; hsa-mir-1257 ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p
Nearest miRNA
hsa-let-7i/Upstream/183817; hsa-mir-10527/Downstream/1036077;
Nearest TSS
ENST00000382841/Upstream/66566; ENST00000536219/Downstream/898;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/155153, chr12-CpG: 23/Downstream/14291
Upstream sequence
AAAAATTAGACACAGGGTCTCACTATGTTGCCCAAGCTAGACCCAAATTCCTGGGCTCAAACAATCCTCCCA
Junction sequence
AAAAATTAGACACAGGGTCTCACTATGTTGCCCAAGCTAGACCCAAATTCCTGGGCTCAAACAATCCTCCCACCTCTAGTACAAAGAT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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