Basic Information
VIS ID
TVIS10015743
Fusion event
HBV-LOC107986931 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
23846793/23989280 (Hg38)
End
23846793/23989280 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986931
Nearest miRNA
hsa-mir-124-1/Upstream/1744243; hsa-mir-10400/Downstream/964516;
Nearest TSS
ENST00000518652/Upstream/134473; ENST00000523440/Downstream/187800;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/262032, chr8-CpG: 165/Downstream/924109
Nearby gene
STC1 ;
Upstream sequence
CCCTGATTATTTTTTAGTTCAACTTTGTCTCCAAAAAC
Junction sequence
CCCTGATTATTTTTTAGTTCAACTTTGTCTCCAAAAACTTTATGCCTACAGCCTCCTAGTACAAAGACCTTTAATCTAATCTCCTCCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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