Basic Information
VIS ID
TVIS10015746
Fusion event
HBV-chr10 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
11490590/11448591 (Hg38)
End
11490590/11448591 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-3155a/Upstream/5296314; hsa-mir-107/Downstream/682169;
Nearest TSS
ENST00000439456/Upstream/128707; ENST00000604634/Downstream/83684;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/103715, chr10-CpG: 41/Downstream/14632
Nearby gene
USP6NL(+) ;
Upstream sequence
CCTATGGGATCAGACTTTGGAGCAAGGTCCCCAG
Junction sequence
CCTATGGGATCAGACTTTGGAGCAAGGTCCCCAGGTGGTGCTGGTGAACAGACCAATTTATGCCTACAGCCTCCTAGTACAAAGACCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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