Basic Information
VIS ID
TVIS10015749
Fusion event
HBV-LOC105369788 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
58839508/58445725 (Hg38)
End
58839508/58445725 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369788
Nearest miRNA
hsa-mir-1228/Upstream/621033; hsa-let-7i/Downstream/3814634;
Nearest TSS
ENST00000382841/Upstream/357833; ENST00000548969/Downstream/98399;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/509504, chr12-CpG: 100/Downstream/474053
Upstream sequence
AAAAGAAAGTTTATAAACTGCTCATGAGGGAAAGTT
Junction sequence
AAAAGAAAGTTTATAAACTGCTCATGAGGGAAAGTTAACTCCTCCCAGTCTTTAAACAAACAGTCTTTGAAGTACGCCTCAAGGTCGG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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