Basic Information
VIS ID
TVIS10015752
Fusion event
HBV-LOC105377876 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
83333834/82624117 (Hg38)
End
83333834/82624117 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377876
Nearest miRNA
hsa-mir-10398/Upstream/4084808; hsa-mir-1202/Downstream/7688625;
Nearest TSS
ENST00000381078/Upstream/259873; ENST00000451856/Downstream/269916;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/258515, chr6-CpG: 39/Downstream/441538
Upstream sequence
CTGCAACAAGTTAGCAATTTACATTTACAGGATT
Junction sequence
CTGCAACAAGTTAGCAATTTACATTTACAGGATTCCTAATCTCCTCCCCCAACTCCTCCCAGTCTTTAAACAAACAGTCTTTGAAGTA
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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