Basic Information
VIS ID
TVIS10015762
Fusion event
HBV-chr6 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
29669332/29701555 (Hg38)
End
29669332/29701555 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-3143/Upstream/2553867; hsa-mir-10398/Downstream/882777;
Nearest TSS
ENST00000381078/Upstream/20445; ENST00000486194/Downstream/21220;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/51358, chr6-CpG: 89/Downstream/21774
Nearby gene
ZDHHC20P1(+6586) ;
Upstream sequence
AGATGCTCTATTTTTTCTTAGTTTTGTTTTTAT
Junction sequence
AGATGCTCTATTTTTTCTTAGTTTTGTTTTTATTCCAATTTATGCCTACAGCCTCCTAGTACAAAGATCATTAACCTAATCTCCTCCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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