Basic Information
VIS ID
TVIS10015765
Fusion event
HBV-chr1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr1
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
90965993/90500436 (Hg38)
End
90965993/90500436 (Hg38)
Orient
+
Fragile sites / regions
FRA1D
Nearest miRNA
hsa-mir-101-1/Upstream/4142749; hsa-mir-11399/Downstream/3346396;
Nearest TSS
ENST00000473358/Upstream/505299; ENST00000425185/Downstream/33036;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/504758, chr1-CpG: 67/Downstream/206109
Upstream sequence
ACAAGTTAAAAATTGACAAGTGTATTGAAGGGAAAG
Junction sequence
ACAAGTTAAAAATTGACAAGTGTATTGAAGGGAAAGCAGCCTACTAGTACAAAGATCATTAACCTAATCTCCTCCGCCAAGTGCTCCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate