Basic Information
VIS ID
TVIS10015769
Fusion event
HBV-chr2 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
103820709/103204251 (Hg38)
End
103820709/103204251 (Hg38)
Orient
+
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/771885; hsa-mir-10b/Downstream/5937239;
Nearest TSS
ENST00000437798/Upstream/27991; ENST00000609391/Downstream/661714;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/467296, chr2-CpG: 44/Downstream/1454879
Upstream sequence
GTTATTGAGGATTTTTGCATTGATGTTCATCAGGGATATTG
Junction sequence
GTTATTGAGGATTTTTGCATTGATGTTCATCAGGGATATTGCATGGTGCTGGTGAACAGAACAATTTATGC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate