Basic Information
VIS ID
TVIS10015771
Fusion event
HBV-chr1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
249079953/248785754 (Hg38)
End
249079953/248785754 (Hg38)
Orient
+
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/1583694; hsa-mir-3124/Downstream/40623;
Nearest TSS
ENST00000473358/Upstream/30015; ENST00000515369/Downstream/28419;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/37478, chr1-CpG: 43/Downstream/26142
Nearby gene
SH3BP5L(+) ;
Upstream sequence
AGTTATAATGATTGGGGCTTAGAACC
Junction sequence
AGTTATAATGATTGGGGCTTAGAACCTAAATCAGACAGTCTTTGAAGTATGCCTCAAGGTCGGTCGTTGAC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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