ESRRG _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015772
Fusion event
HBV-ESRRG integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
217144068/216970726 (Hg38)
End
217144068/216970726 (Hg38)
Orient
+
Location type
Intronic
Target gene
ESRRG
miRNAs that regulate target gene
hsa-mir-205-5p ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6815-3p ; hsa-mir-2115-5p ; hsa-mir-5580-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-935 ; hsa-mir-320a
Nearest miRNA
hsa-mir-101-1/Upstream/4893041; hsa-mir-1182/Downstream/3147127;
Nearest TSS
ENST00000473358/Upstream/31053; ENST00000470448/Downstream/106163;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/369334, chr1-CpG: 29/Downstream/118930
Upstream sequence
TCAAATATTTGTGAACTTCAAAGGGGGATAGTC
Junction sequence
TCAAATATTTGTGAACTTCAAAGGGGGATAGTCGCATGGGGCTGGCGAACAGACCAATTTATGCCTACCGC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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