TMEM87A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015780
Fusion event
HBV-TMEM87A integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr15
Cytoband
q15.1
Reference genome
GRCh37/hg19
Start
42504934/42212736 (Hg38)
End
42504934/42212736 (Hg38)
Orient
-
Location type
Intronic
Target gene
TMEM87A
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-mir-107 ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/13070; hsa-mir-10393/Downstream/1580923;
Nearest TSS
ENST00000557528/Upstream/4117; ENST00000561871/Downstream/5270;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/4373, chr15-CpG: 32/Downstream/60518
Upstream sequence
CCCTCATAATGATAGTTTAGTTGAGTACAGAATTCC
Junction sequence
CCCTCATAATGATAGTTTAGTTGAGTACAGAATTCCTCCCAGTCCTTAAACAAACAGTCTTTGAAGTATGC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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