Basic Information
VIS ID
TVIS10015785
Fusion event
HBV-chrX integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chrX
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
108297754/109054524 (Hg38)
End
108297754/109054524 (Hg38)
Orient
-
Nearest miRNA
hsa-let-7f-2/Upstream/2414628; hsa-mir-105-1/Downstream/1000805;
Nearest TSS
ENST00000429181/Upstream/317984; ENST00000372107/Downstream/427548;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/317609, chrX-CpG: 30/Downstream/482301
Upstream sequence
CGGGCCGCCGGTGAAATACCACTACTCTGATGG
Junction sequence
CGGGCCGCCGGTGAAATACCACTACTCTGATGGTGCATGGTGCTGGTGAACAGAACAATTTATGCCTACAG
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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