Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene72976375729709137297261372973644
Basic Information
VIS ID
TVIS10015791
Fusion event
HBV-LOC105377273 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
End
73839361/72973644 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/6696716; hsa-mir-1243/Downstream/3599924;
Nearby gene
COX18(+) ;
Upstream sequence
TAAATTTAAATTTATTTATTTATTTTTAGAGATGGGGTCTCATCATATTGCCCG
Junction sequence
TAAATTTAAATTTATTTATTTATTTTTAGAGATGGGGTCTCATCATATTGCCCGTAATTTATGCCTACAGC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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