Basic Information
VIS ID
TVIS10015792
Fusion event
HBV-chr16 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr16
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
9362868/9269011 (Hg38)
End
9362868/9269011 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-1225/Upstream/3636445; hsa-mir-11401/Downstream/2037429;
Nearest TSS
ENST00000527434/Upstream/161837; ENST00000564305/Downstream/86577;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/176179, chr16-CpG: 282/Downstream/911075
Nearby gene
MIR548X(+) ;
Upstream sequence
CCTCCTAAACAAAACCAAGGTTTTGTTGATAAGA
Junction sequence
CCTCCTAAACAAAACCAAGGTTTTGTTGATAAGAAGCCTCCTAGTACAAAGATCATTAACCTAATCTCCTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate