SUMF1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015794
Fusion event
HBV-SUMF1 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
4237000/4195316 (Hg38)
End
4237000/4195316 (Hg38)
Orient
+
Location type
Intronic
Target gene
SUMF1
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-106b-5p ; hsa-mir-128-3p
Nearest miRNA
hsa-let-7g/Downstream/1054861;
Nearest TSS
ENST00000440867/Upstream/394441; ENST00000462115/Downstream/107988;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/394228, chr3-CpG: 42/Downstream/108005
Nearby gene
SETMAR ;
Upstream sequence
TTTATTGCTCTTCCCTTGGCTTATGTACAGGAATTGGTTATGACCCAC
Junction sequence
TTTATTGCTCTTCCCTTGGCTTATGTACAGGAATTGGTTATGACCCACACAGACCAATTTATGCCTACAGC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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