Basic Information
VIS ID
TVIS10015795
Fusion event
HBV-LOC110806263 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
End
1295715/1295600 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-4635/Upstream/232626; hsa-mir-10397/Downstream/13710;
Nearest CpG islands
chr5-CpG: 485/Target, None/Upstream, None/Downstream
Nearby gene
TERT ;
Upstream sequence
GAATGCCGGACGTGAAGGGGAGGACGGAGGCGCGTAGAC
Junction sequence
GAATGCCGGACGTGAAGGGGAGGACGGAGGCGCGTAGACGCTGGTGAACAGACCAATTTATGCCTACAGCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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