Basic Information
VIS ID
TVIS10015800
Fusion event
HBV-LOC105370550 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr14
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
69718082/69251365 (Hg38)
End
69718082/69251365 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA14C
Target gene
LOC105370550
Nearest miRNA
hsa-mir-208a/Upstream/1809435; hsa-mir-1185-1/Downstream/3265455;
Nearest TSS
ENST00000550708/Upstream/15753; ENST00000554858/Downstream/7912;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/59309, chr14-CpG: 220/Downstream/8168
Nearby gene
GALNT16(+) ;
Upstream sequence
TCTCCTACTCATCTCTTGCCCTTTTATTATTTTTTATGAGCCTGT
Junction sequence
TCTCCTACTCATCTCTTGCCCTTTTATTATTTTTTATGAGCCTGTTACAAAGATCATTAACCTACTCTCCT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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