Basic Information
VIS ID
TVIS10015803
Fusion event
HBV-chr7 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr7
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
129410739/129770899 (Hg38)
End
129410739/129770899 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10525/Upstream/407; hsa-mir-10399/Downstream/3793;
Nearest TSS
ENST00000635602/Upstream/140821; ENST00000480018/Downstream/14286;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/7948, chr7-CpG: 354/Downstream/7547
Nearby gene
MIR182 ;
Nearest cancer related gene
MIR182(OG, -) ;
Upstream sequence
GTGGGCTTAGTAAATAGCAAAACCCAGCCCACATTAGCCATCTCTTCCCCAGC
Junction sequence
GTGGGCTTAGTAAATAGCAAAACCCAGCCCACATTAGCCATCTCTTCCCCAGCGGTACTGGTGAACAGACC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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