Basic Information
VIS ID
TVIS10015804
Fusion event
HBV-chr6 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr6
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
51999231/52134433 (Hg38)
End
51999231/52134433 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10398/Upstream/6936663; hsa-mir-10524/Downstream/9916;
Nearest TSS
ENST00000381078/Upstream/46808; ENST00000340057/Downstream/16686;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1283715, chr6-CpG: 54/Downstream/149918
Nearby gene
MIR206 ;
Nearest cancer related gene
MIR206(TSG, -) ;
Upstream sequence
CAAATCCTTATGAGTCTCATGCACTATTTTGGTTAGGTAAGCC
Junction sequence
CAAATCCTTATGAGTCTCATGCACTATTTTGGTTAGGTAAGCCAGGTGGTCTCCATGCGACGTGCAGAGGT
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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