Basic Information
VIS ID
TVIS10015807
Fusion event
HBV-chr5 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr5
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
141379511/141999946 (Hg38)
End
141379511/141999946 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10397/Upstream/1352020; hsa-mir-103a-1/Downstream/1679914;
Nearest TSS
ENST00000502646/Upstream/17259; ENST00000509436/Downstream/5495;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/30407, chr5-CpG: 48/Downstream/12849
Nearby gene
GNPDA1(+) ;
Upstream sequence
TAAACATAAAAATCAGTGGATTTATATCAAAAAAAAATATTT
Junction sequence
TAAACATAAAAATCAGTGGATTTATATCAAAAAAAAATATTTTGGTGCTGGTGAACACACCAATTTATGCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate