Basic Information
VIS ID
TVIS10015808
Fusion event
HBV-chr20 integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
-
Host Sequence
Chromosome
chr20
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
58053923/59478868 (Hg38)
End
58053923/59478868 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-103a-2/Upstream/660555; hsa-mir-1-1/Downstream/829606;
Nearest TSS
ENST00000382410/Upstream/114095; ENST00000443747/Downstream/36323;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/74848, chr20-CpG: 55/Downstream/98357
Nearby gene
PHACTR3 ;
Upstream sequence
GTGATTATTCATTCATTCAGTGATGGACAC
Junction sequence
GTGATTATTCATTCATTCAGTGATGGACACGCAGGGTGCTGGTGAACACACCAATTTATGCCTACAGCATC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
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