IL1RAP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10015809
Fusion event
HBV-IL1RAP integration
Validated
No
Detection method
MAPS
Data source
Curated
Sample type
Adjacent tissue
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2012
PubMed ID
23236287
Virus Sequence
Virus name
HBV
Reference genome
AY800389.1;AY800390.1;AY800391.1;AY800392.1
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
190235915/190518126 (Hg38)
End
190235915/190518126 (Hg38)
Orient
+
Location type
Intronic
Target gene
IL1RAP
miRNAs that regulate target gene
hsa-mir-204-5p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-1228-3p ; hsa-mir-146a-5p ; hsa-mir-146b-5p ; hsa-mir-510-3p ; hsa-mir-494-3p ; hsa-mir-4635 ; hsa-mir-548c-3p
Nearest miRNA
hsa-let-7g/Upstream/688117; hsa-mir-3137/Downstream/4616380;
Nearest TSS
ENST00000440867/Upstream/1907; ENST00000482913/Downstream/37738;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/3471, chr3-CpG: 35/Downstream/344589
Upstream sequence
AGAATAAAGTCAGACCAAAGGGATGTCTCCTAACA
Junction sequence
AGAATAAAGTCAGACCAAAGGGATGTCTCCTAACAACAGCCTCCTAGTACAAAGATCATTAACCTAACCTC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Ding, D., et al. Recurrent targeted genes of hepatitis B virus in the liver cancer genomes identified by a next-generation sequencing-based approach. PLoS Genet ,2010,8(12): e1003065.
Curate